From 75493033c8b158fd19de00fe28cb5ed782c5c738 Mon Sep 17 00:00:00 2001
From: Sandra Derozier <sandra.derozier@inrae.fr>
Date: Thu, 19 Oct 2023 09:49:30 +0200
Subject: [PATCH 1/2] Release note October 2023
---
templates/release.html | 102 ++++++++++++++++++++++++++++++++++++-----
1 file changed, 90 insertions(+), 12 deletions(-)
diff --git a/templates/release.html b/templates/release.html
index 47b66fd..02fe9b6 100644
--- a/templates/release.html
+++ b/templates/release.html
@@ -31,7 +31,96 @@
<div class="card" style="border-color: #21517A;">
<div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;">
- Omnicrobe 1.2 (<i>current release</i>)
+ Omnicrobe 1.3 (<i>current release</i>)
+ </div>
+ <div class="card-body">
+ <p align='justify'>
+ <h5 class="text-info">Information about the data</h5>
+ <ul>
+ <li>Ontologies used: <a href="http://agroportal.lirmm.fr/ontologies/ONTOBIOTOPE" target="_blank">OntoBiotope</a> version 2022-04-28 & <a href="https://forgemia.inra.fr/omnicrobe/extended-microorganisms-taxonomy" target="_blank">Taxonomy</a> version 2023-10-09.</li>
+ </ul>
+ <div style="margin-left: 15%;margin-right: 15%;">
+ <table class="table table-sm table-striped">
+ <caption class="text-center">Versions and number of relationships per source</caption>
+ <thead>
+ <tr>
+ <th scope="col"></th>
+ <th class="text-right" scope="col">PubMed</th>
+ <th class="text-right" scope="col">GenBank</th>
+ <th class="text-right" scope="col">DSMZ</th>
+ <th class="text-right" scope="col">CIRM-BIA</th>
+ <th class="text-right" scope="col">CIRM-CFBP</th>
+ <th class="text-right" scope="col">CIRM-Levures</th>
+ </tr>
+ </thead>
+ <tbody>
+ <tr>
+ <th scope="row">Version</th>
+ <td class="text-right">2023-10-09</td>
+ <td class="text-right">2023-10-15</td>
+ <td class="text-right">2023-10-09</td>
+ <td class="text-right">2023-03-09</td>
+ <td class="text-right">2023-03-16</td>
+ <td class="text-right">2022-10-14</td>
+ </tr>
+ <tr>
+ <th scope="row">Taxa - Habitat relations</th>
+ <td class="text-right">623,402</td>
+ <td class="text-right">274,053</td>
+ <td class="text-right">51,170</td>
+ <td class="text-right">677</td>
+ <td class="text-right">1,216</td>
+ <td class="text-right">930</td>
+ </tr>
+ <tr>
+ <th scope="row">Taxa - Phenotype relations</th>
+ <td class="text-right">45,158</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ </tr>
+ <tr>
+ <th scope="row">Taxa - Use relations</th>
+ <td class="text-right">14,118</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ <td class="text-right">-</td>
+ </tr>
+ </tbody>
+ </table>
+ </div>
+
+ <h5 class="text-info">New features and improvements in this release</h5>
+ <ul>
+ <li>improved extraction quality</li>
+ <li>fixed bugs</li>
+ <li>updated taxonomy</li>
+ </ul>
+ <!-- <h5 class="text-info">Fixed in this release</h5>
+ <ul>
+ <li>...</li>
+ </ul> -->
+ <!--h5 class="text-info">Source code</h5>
+ <ul>
+ <li>Text-mining workflow: GitHub repository (<a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>).</li>
+ <li>Web interface: GitHub repository (<a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>).</li>
+ </ul-->
+ </p>
+ </div>
+ <div class="card-footer text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;">
+ 19 October 2023
+ </div>
+ </div>
+ <br/>
+ <p><h4 class="text-info">Previous releases</h4></p>
+
+ <div class="card" style="border-color: #21517A;">
+ <div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;">
+ Omnicrobe 1.2
</div>
<div class="card-body">
<p align='justify'>
@@ -100,23 +189,12 @@
<li>fixed bugs</li>
<li>updated taxonomy</li>
</ul>
- <!-- <h5 class="text-info">Fixed in this release</h5>
- <ul>
- <li>...</li>
- </ul> -->
- <!--h5 class="text-info">Source code</h5>
- <ul>
- <li>Text-mining workflow: GitHub repository (<a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>).</li>
- <li>Web interface: GitHub repository (<a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>).</li>
- </ul-->
</p>
</div>
<div class="card-footer text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;">
6 April 2023
</div>
</div>
- <br/>
- <p><h4 class="text-info">Previous releases</h4></p>
<div class="card" style="border-color: #21517A;">
<div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;">
--
GitLab
From 9b04f271ab4ac2654befdd529a75d2fb015a9c6d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sandra=20D=C3=A9rozier?= <sandra.derozier@inra.fr>
Date: Thu, 19 Oct 2023 10:23:23 +0200
Subject: [PATCH 2/2] Release Update
---
templates/release.html | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/templates/release.html b/templates/release.html
index 02fe9b6..58c81d1 100644
--- a/templates/release.html
+++ b/templates/release.html
@@ -195,7 +195,7 @@
6 April 2023
</div>
</div>
-
+ </br>
<div class="card" style="border-color: #21517A;">
<div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;">
Omnicrobe 1.1
--
GitLab