DSL2
DSL2 version
- pass to DSL2 to get 2 workflow (Short-read and HiFi)
- gene are named with feature (prot/rrna)
- aln2taxaffi.py refactored to use new_taxdump and prot.accession2taxid.FULL
- add header in diamond output and use it while parsing
- replace mosdepth by samtools coverage
- replace bedtools bamtofastq by samtools fastq
- check gff valididy after prokka
- simplify config files
- upadate documentation
- chunk assambly to reduce process time of filtering step
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changed milestone to %V2.2 DSL2 transition
assigned to @celine.noirot
added 27 commits
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2b23244c...54210901 - 26 commits from branch
master
- 529e7714 - Merge branch 'master' into 'dev'
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2b23244c...54210901 - 26 commits from branch
mentioned in commit d90c0efa
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