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Created with Raphaël 2.2.04Sep28Aug2625241319Jul181716134326Jun2524131210532123May222116151330Apr25221917111098543229Mar28252119131211544Jan15Dec1413121187430Nov29282725232221208767Dec9Nov13Oct5SepReparameterisation of the capture hazard rates.mainmainLikelihood plot script. Minor fixes.Calculations. Reparameterisation of the conditional specific hazard rates.Calculations. Reword section 2 headings.Targets. Export figures of the simulated dispersion process.Targets. Simplify figures. Make targets that call a function to make the figure and then save it to a file.Targets function tar_save_figure(). WIP not working.Code style. Fix trailing spaces.Targets. Remove sim_traps. Call function trap_counts() instead.Figure capture times. Inverse colour coding.Target. Remove sim_diffusion. Call sim_results() each time instead of caching a big table.Figure colour consistency. Use steelblue and darkorange.Target. Externalise figure empirical vs theoretical density.Code style. Access slots in sitModel objects using functions.Fixes figure fig_capture_prob_quantile.Function capture_prob_data(). Generalise some hard-coded numbers, and modularise parts of the code.Target. Export figure capture probabilities.Doc. Add whiteboard notes.Report sit-methods. Fix equation of solution to dispersal equation.Figure: empirical and theoretical capture times from simulation study.Function for extracting trap results from simulations.Function simulation_parameters(). Return alternative names and parameterisations.Targets. Fix indentation.Targets. Rely on function trap_counts().Function to extract trap_counts() directly from simulations.Functions. Remove trailing spaces.Target sit_scenario_dispersion_only. Specify only one trap in comment.Sit methods. Fix figure of empirical density.Targets. Fix invisible character causing merge conflict.Targets. Fix comments and spaces.Correction MSD_distribution file and additionnal comments.Update estimations.RCorrection loglike figure.Correction in probability functionUpdate for functions.R and article.RmdFirst densities of D with the multinomial model using MSDQuantile computation for capture prob figure.Add target figures.Documentation/organisation.Add target for crete figure.