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UMR-ASTRE
sit-methods
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da4c7fdf3c98d15ee8ee9507a0bd6c93be62751c
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additive-overall-hazard-rate
lighter-sitModel-objects
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Created with Raphaël 2.2.0
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Reparameterisation of the capture hazard rates.
main
main
Likelihood plot script. Minor fixes.
Calculations. Reparameterisation of the conditional specific hazard rates.
Calculations. Reword section 2 headings.
Targets. Export figures of the simulated dispersion process.
Targets. Simplify figures. Make targets that call a function to make the figure and then save it to a file.
Targets function tar_save_figure(). WIP not working.
Code style. Fix trailing spaces.
Targets. Remove sim_traps. Call function trap_counts() instead.
Figure capture times. Inverse colour coding.
Target. Remove sim_diffusion. Call sim_results() each time instead of caching a big table.
Figure colour consistency. Use steelblue and darkorange.
Target. Externalise figure empirical vs theoretical density.
Code style. Access slots in sitModel objects using functions.
Fixes figure fig_capture_prob_quantile.
Function capture_prob_data(). Generalise some hard-coded numbers, and modularise parts of the code.
Target. Export figure capture probabilities.
Doc. Add whiteboard notes.
Report sit-methods. Fix equation of solution to dispersal equation.
Figure: empirical and theoretical capture times from simulation study.
Function for extracting trap results from simulations.
Function simulation_parameters(). Return alternative names and parameterisations.
Targets. Fix indentation.
Targets. Rely on function trap_counts().
Function to extract trap_counts() directly from simulations.
Functions. Remove trailing spaces.
Target sit_scenario_dispersion_only. Specify only one trap in comment.
Sit methods. Fix figure of empirical density.
Targets. Fix invisible character causing merge conflict.
Targets. Fix comments and spaces.
Correction MSD_distribution file and additionnal comments.
Update estimations.R
Correction loglike figure.
Correction in probability function
Update for functions.R and article.Rmd
First densities of D with the multinomial model using MSD
Quantile computation for capture prob figure.
Add target figures.
Documentation/organisation.
Add target for crete figure.
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